Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MYKSIYNFQETNTNFLENLESLNDDNYELLNDKELVSDSNELKLISKVYIRKKDKKLLDWQLLIKNVYLDTEEDDNLFSESGHHFDAILFLKEDTTLQNNVYIIPFGQAYHDINNLIDYDFGIDFAERAIKNEDIVNKNVNFFQQNRLKEIVNYRRNSVDYVRPSESYISVQGHPQNPQIFGKTMTCGTSI-SLRVPNRKQQFIDKISVIIKEINAIINL--PQKISEFPRIVTLKDLNKIEVLDTLLLKKLSNSSTTENISIDISR--FLELSNMILLLDDMLDVNIYINSFKNNTLETFDATDPEVDYITEIGDYLLKYDVNSINDVRIEVIDNLGHSNNMLLKTILHAEVEMEDGKKYLLQNGKWGYFNREFFDLLNDHLNEIEIRYNTLTPTGLVFKEGEEGYIKEIVGRLPEEYLMLHKKFIKPINKNFIVKGNGIELADLYNIKNKELFTIKRGINTSLSLYSLEQNIIAINALKYPESYNFEELIEAIPDNSENIFNDIQRSTNFSIVWILPISSIDNMPIKDMVHTSNVINKNFQLTNLGSVLLKNKLVEWSLYLKDQRINPIIYMETPTEDRN |
| 2NMV Chain:A ((80-349)) | ---------------------------------------------------------------------------------------------------------------------------------------------FFPNNAVEYFVSY----YDYYQP-EAYV-----PQTDTFIEKDASINDEIDKLRHSATSALFERRDVIIIASVSCIYGLGSPEEYREM--VVSLR--TEMEIERNELLRKLVDIQYARN-DIDFQRGTFRVRGDVVEIFPASRDEHCVRVEFFGDEIERIR----EVDALT--GEILGDRD-----HVAIFPASHFVTRAEKMEKAIQNIEKELEEQLKVMHENGK----------LLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLTLRPP---------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2NMV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -20876 for 1513 contacts (-13.8/contact) +
2D Compatibility (PS) -24617 + (NN) -4551 + (LL) 22244
1D Compatibility (HY) -13600 + (ID) 3350
Total energy: -44750.0 ( -29.58 by residue)
QMean score : 0.124
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