Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATKKDVHDLFLNHVNS-NAVKTRKMMG----EYIIYYD--SVVIGGLYD--------------NRLLVKATKSVRHQLQDNTLVSPYPG--AKEMILIPD--ITEAINLTNLFELIKNDLKN
2KFP Chain:A ((5-115))
---------QFIDYAQKKYDTKPDHPWEKFPDYAVFRHSDNDKWYALLMDIPAEKIGINGDKRVDVIDLKVQPELVGSLRKKPGIYPAYHMNKEHWITVLLNGPLGAKEIHSLIEDSFQL---
General information:
TITO was launched using:
RESULT:
Template:
2KFP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47147 for 530 contacts (-89.0/contact) +
2D Compatibility (PS) -9526 + (NN) -4261 + (LL) 776
1D Compatibility (HY) -1600 + (ID) 550
Total energy: -62308.0 ( -117.56 by residue)
QMean score : 0.385
(partial model without unconserved sides chains):
PDB file :
Tito_2KFP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KFP-query.scw
PDB file :
Tito_Scwrl_2KFP.pdb
: