Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKKENTTTTLFVYEKPKSTISEKFRGIRSNIMFSKANGEVKRLLVTSEKPGAGKSTVVSNVAITYAQAGYKTLVIDGDMCKPTQNYIFNEQNN--NGLSSLIIGRTTMSEAITSTEIENLDLLTAGPVPPNPSELIGSERFKELVDLF--NKRYDIIIVDTPPVNTVTDAQLYARAIKDSLLVIDSEKNDKNEVKKAKALMEKAGSNILGVILNKTKVDKSSSYYHYYGDE
4V03 Chain:A ((5-177))
-------------------------------------------IVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDAD---RNLDMILGLENRIVYDILDVLEGRVPYEKAL----VKDKRGLSLWLLP-----VIDIEKWNKTVEEIKNSGNYDYILVDS-PAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKRNYKVIVNRIK--------------
General information:
TITO was launched using:
RESULT:
Template:
4V03.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59072 for 1270 contacts (-46.5/contact) +
2D Compatibility (PS) -17150 + (NN) -10025 + (LL) 3228
1D Compatibility (HY) -10800 + (ID) 2050
Total energy: -95869.0 ( -75.49 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_4V03.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4V03-query.scw
PDB file :
Tito_Scwrl_4V03.pdb
: