Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------------------------------------MKRLFDVVSSIYGLVVLSPILLITALLIKMESPGPAIFK----QKRPTINNELFNIYKFRSMKIDTPNVATDLMDSTSYITKTGKVIRKTSIDELPQLLNVLKGEMSIVGPRPALYNQYELIEKRTKANVHTIRPGVTGLAQVMGRDDITDDQKVAYD-HYYLTHQSMMLDMYIIYKTIKNIVTSEGVHH-------------------------------------------------------------------------------------------------------------------------------------------------------- |
| 4OCV Chain:A ((24-378)) | TNEALFDVASHFALEGTVDSIEPYGDGHINTTYLVTTDGPRYILQRMNTGIFP-DTVNLMRNVELVTSTLKAQGKETLDIVRTTSGDTWAEIDGGAWRVYKFIEHTMSYNLVPN-------------PDVFREAGRAFGDFQNFLSG-----------FDANQLTE--TIAHFHDTPHRFEDFKKALAADELGRAAGCGPEIEFYLSHADQY---AVVMDGLRDGSIPLRVTHNDTKLNNILMDATTGKARAIIDLDTIMPGSMLFDFGDSIRFGASTALEDERDLDKVHFSTELFRAYTEGFVGELRDSITAREAELLPFSGNLLTMECGMRFLADYLEGDVYFATKYPEHNLVRSRTQIKLVREMEQRADETRAIVADVMETT |
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General information:
TITO was launched using:
| RESULT:
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Template: 4OCV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -37539 for 821 contacts (-45.7/contact) +
2D Compatibility (PS) -15640 + (NN) 2111 + (LL) 1844
1D Compatibility (HY) -7600 + (ID) 1200
Total energy: -58024.0 ( -70.67 by residue)
QMean score : 0.154
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