Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDTHTKEQQFSNLVRSYRKEYVGKGPNSIRVSFKDNWAIAHMTGVLSKVESFYLNDKRNESMLHYTRTEKIKQMYKEIDVNEMESLVGAKFVKLFTDIDLNDDEVISIFVFDKSIE
3ABF Chain:A ((15-45))
----EKKRELVRRLTEMASRLLGEPYEEVRVILYE---------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3ABF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 5178 for 135 contacts (38.4/contact) +
2D Compatibility (PS) -3558 + (NN) -3325 + (LL) 6928
1D Compatibility (HY) -2800 + (ID) 200
Total energy: 2223.0 ( 16.47 by residue)
QMean score : 0.498
(partial model without unconserved sides chains):
PDB file :
Tito_3ABF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ABF-query.scw
PDB file :
Tito_Scwrl_3ABF.pdb
: