Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKRQMGIFIYAGIIGGLLSGIVKLGWEVMFPPRTPERNATNPPQELLQQLGFSSEFTHQTYTFSNMELPWVSFIVHFSFSIVIAIIYCILVKKYAYLAIGQGAVFGIAIWVLFHLIIMPIMHTVPAVWDQPYQEHLSEFFGHIVWMMTIELVRQHFVYRYKLN
3FXD Chain:B ((29-86))
-VTDATLGSVYSEIISPVKDCILTVAKAVSF---NPGGKDNTDAVEVLTELNTKVERAALNQ------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3FXD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13738 for 304 contacts (-45.2/contact) +
2D Compatibility (PS) -5685 + (NN) 1621 + (LL) 10812
1D Compatibility (HY) -1600 + (ID) 550
Total energy: -9140.0 ( -30.07 by residue)
QMean score : 0.185
(partial model without unconserved sides chains):
PDB file :
Tito_3FXD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FXD-query.scw
PDB file :
Tito_Scwrl_3FXD.pdb
: