Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKYEHIAKQLNAFIHQSNFKPGDKLPNVTQLKERYQVSKSTIIKALGLLEQDGLIYQAQGSGIYVRNIADANRINVFKTNGFSKSLGEHRMTSKVLVFKEMATPPKSVQDELQLNADDTVYYLERLRFVDDDVLCIEYSYYHKEIVKYLNDDIAKGSIFDYLESNMKLRIGFSDIFFNVDKLTSSEASLLQLSTGEPCLRYHQTFYTMTGKPFDSSDIVFHYRHAQFYIPSKK
4U0Y Chain:A ((15-77))
---YYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFV------------------------------------------------------------------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4U0Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43370 for 391 contacts (-110.9/contact) +
2D Compatibility (PS) -7077 + (NN) -6138 + (LL) 11596
1D Compatibility (HY) -4800 + (ID) 1000
Total energy: -50789.0 ( -129.90 by residue)
QMean score : 0.685
(partial model without unconserved sides chains):
PDB file :
Tito_4U0Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4U0Y-query.scw
PDB file :
Tito_Scwrl_4U0Y.pdb
: