Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANYPQLNKEVQQGEIKVVMHTNKGDMTFKLFPNIAPKTVENFVTHA--KNGY-YDGITFHRVINDFMIQGGDPT-ATGMGGESIYGGAFEDE-FSLNAFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDIANTKVGPQDKPLHDVVIE---SIDVEE
1CYN Chain:A ((20-171))
------------------------GRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGP-GWVSMANAGKDTNGSQFFITTVK----------------------------TAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEK
General information:
TITO was launched using:
RESULT:
Template:
1CYN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46110 for 1047 contacts (-44.0/contact) +
2D Compatibility (PS) -15313 + (NN) -7315 + (LL) 2780
1D Compatibility (HY) -14000 + (ID) 3850
Total energy: -83808.0 ( -80.05 by residue)
QMean score : 0.485
(partial model without unconserved sides chains):
PDB file :
Tito_1CYN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CYN-query.scw
PDB file :
Tito_Scwrl_1CYN.pdb
: