Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKEIVIASNNQGKINDFKVIFPDYHVIGISELIPDFDVEETGSTFEENAILKSEAAAKALNKTVIADDSGLEVFALNGEPGIYSARYAGENKSDEANIEKLLNKLGNTTDRRAQFVCVISMSG--PDMETKVFKGTVSGEIADGKYGENGFGYDPIFYVPKLDKTMAQLSKEQKGQISHRRNAINLLQAFLEGEKNV
4F95 Chain:A ((11-192))
-KKIVFVTGNAKKLEEVVQILGDKFTCTL--VAQKIDLPEYQGEPDEISIQKCQEAVRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKP-----EGLHQLLAGFEDKSAYALCTFALSTGDPSQPVRLFRGRTSGRIVAPR-GCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFRALLELQEYF------
General information:
TITO was launched using:
RESULT:
Template:
4F95.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56022 for 1376 contacts (-40.7/contact) +
2D Compatibility (PS) -19671 + (NN) -10033 + (LL) 884
1D Compatibility (HY) -10400 + (ID) 2600
Total energy: -97842.0 ( -71.11 by residue)
QMean score : 0.464
(partial model without unconserved sides chains):
PDB file :
Tito_4F95.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4F95-query.scw
PDB file :
Tito_Scwrl_4F95.pdb
: