Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKLFIPYIMG---NKDLIENATLLSENGADIIEIGVPFSDPVADGPVIMEAGQQAIKQGITIDYIFNQLEKHGDQIKCNYVLMTYYNIICHYGEQAFFEKCRDTGVYGLIIPDLPYELSQRLKQQFSHYGVKIISLVAMTTDDKRIKDIVSHAEGFIYTVTMNATTGQNGAFHPELKRKIESIKAIANVPVVAGFGIRTPQHVAD-IKEVADGIVIGSEIVKRFKSNTREEIIRYLQSIQQTLNN
2DZV Chain:A ((7-233))
----LIPYLTAGDPDKQSTLNFLLALDEYAGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPAERLKVIDDMTTGFVYLVSLYGT----EEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEKGRE---------------
General information:
TITO was launched using:
RESULT:
Template:
2DZV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -189393 for 1795 contacts (-105.5/contact) +
2D Compatibility (PS) -24678 + (NN) -14024 + (LL) 1904
1D Compatibility (HY) -12000 + (ID) 3600
Total energy: -241791.0 ( -134.70 by residue)
QMean score : 0.695
(partial model without unconserved sides chains):
PDB file :
Tito_2DZV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DZV-query.scw
PDB file :
Tito_Scwrl_2DZV.pdb
: