Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKY----LKLNKTEDFAKLVDQTTLDLTYKADKGQCVILDNEDVTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELAAEKGIVMDGRDIGTVVLPDADLKVYMIASVEERAERRYKDNQLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTTGKSIEEVTDEILAMVSQIK
3AKD Chain:A ((1-208))
MRGI-VTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAE-GNRVLADGEDLTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVPPP--FVAEGRDMGTAVFPEAAHKFYLTASPEVRAWRRARERP-----QAYEEVLRDLLRRD------SA----PAPDALVLDTGGMTLDEVVAWVLAHIRR--
General information:
TITO was launched using:
RESULT:
Template:
3AKD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102560 for 1632 contacts (-62.8/contact) +
2D Compatibility (PS) -21361 + (NN) -6228 + (LL) 1028
1D Compatibility (HY) -12400 + (ID) 3700
Total energy: -145221.0 ( -88.98 by residue)
QMean score : 0.537
(partial model without unconserved sides chains):
PDB file :
Tito_3AKD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AKD-query.scw
PDB file :
Tito_Scwrl_3AKD.pdb
: