Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKFDRHRRLRSSATMRDMVRENHVRKEDLIYPIFVVEKDDVKKEIKSLPGVYQISLNLLESELKEAYDLGIRAIMFFGVPNSKDDIGTGAYIHDGVIQQATRIAKKMYDDLLIVADTCLCEYTDHGHCGVIDDHTHDVDNDKSLPLLVKTAISQVEAGADIIAPSNMMDGFVAEIRRGLDEAGYYN-IPIMSYGVKYASSFFGPFRDAADSAPSFGDRKTYQMDPANRLEALRELESDLKEGCDMMIVKPALSYLDIVRDVKN-HTNVPVVAYNVSGEYSMTKAAAQNGWIDEERVVMEQMVSMKRAGADMIITYFAKDICRYLDK |
1PV8 Chain:A ((30-329)) | ---------------------------NLIYPIFVTDVPDDIQPITSLPGVARYGVKRLEEMLRPLVEEGLRCVLIFGVP------------EESPAIEAIHLLRKTFPNLLVACDVCLC----------------AFRAEESRQRLAEVALAYAKAGCQVVAPSD--DGRVEAIKEALMAHGLGNRVSVMSYSAKFASCFYGPFRDAA-------------LPPGARGLALRAVDRDVREGADMLMVKPGMPYLDIVREVKDKHPDLPLAVYHVSGEFAMLWHGAQAGAFDLKAAVLEAMTAFRRAGADIIITYYTPQLLQWLKE |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PV8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -190759 for 2110 contacts (-90.4/contact) +
2D Compatibility (PS) -28560 + (NN) -12864 + (LL) 3460
1D Compatibility (HY) -22800 + (ID) 5300
Total energy: -256823.0 ( -121.72 by residue)
QMean score : 0.606
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