Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNAIELSNVNYSSDQFNLKNISFKVPQGFVTGFIGRNGAGKTTIIRLIMDLYQPQTGVI---RVLEEDMALNPIELKNSIGFVYSENYFNERWTTKQLEKM-IAP-----FYRKWDHQVFEFYLEKFDLPINKS---IKTFSTGMKMKLSLAVAFSHHAELYIFDEPTSGLDPLARNELLEIIQQELIDENKTIFMSTHIISDLEKIADYIIHLSDGEVILNGSKEQLLQRYQVVSGATEDLDDELASLLIYEEHKRTGFIGLTEHAQVFKEILGHKVNITTPSIENLMVYLEKRKPKYHENIKLMEEGF |
4YMW Chain:J ((17-228)) | -----------------LKGVTLKVNKGEVVVIIGPSGSGKSTLLRCINLLEEPTKGEVFIDGVKINNGKVNINKVRQKVGMVFQ--HFNLFPHLTAIENITLAPVKVKKMNKKEAEELAVDLLAKVGLLDKKDQYPIK-LSGGQKQRLAIARALAMQPEVMLFDEPTSALDPEMVKEVLNVMKQ-LANEGMTMVVVTHEMGFAREVGDRVIFMDDGVIVEEGTPEEIFYRAK----------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YMW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -125811 for 1528 contacts (-82.3/contact) +
2D Compatibility (PS) -21728 + (NN) -10178 + (LL) 7016
1D Compatibility (HY) -13200 + (ID) 3200
Total energy: -167101.0 ( -109.36 by residue)
QMean score : 0.518
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