Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNDLETLKHIIDSSNRITFFTGAGVSVASGVPDFRSMGGLFDEISKDGLSPEYLLSRDYLEDDPEGFINFCHKRLLFV-DTKPNIVHDWIAKLERNQQSLGVITQNIDGLHSDAGSQHVDELHGTLNRFYCNACHKSY-TKSDVIDRTLKHCDNCGGAIRPDIVLYGEMLDQPTIIRALNKIEHADTLVVLGSSLVVQPAAG--LISHFKGDNLIIINKDRTPYDSDATLVIHDDMVSVVKSLMTE
4TWI Chain:A ((3-216))
-----EKLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNR-----YRPEELANPQAFAKDPEKVWKWYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVVRCTSCNNSFEVESAPKIPPLPKCDKCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETP-----------------------
General information:
TITO was launched using:
RESULT:
Template:
4TWI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82943 for 1639 contacts (-50.6/contact) +
2D Compatibility (PS) -22740 + (NN) -9704 + (LL) 2224
1D Compatibility (HY) -13200 + (ID) 4300
Total energy: -130663.0 ( -79.72 by residue)
QMean score : 0.435
(partial model without unconserved sides chains):
PDB file :
Tito_4TWI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TWI-query.scw
PDB file :
Tito_Scwrl_4TWI.pdb
: