Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKAKEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIEQSKANQ
3PIO Chain:V ((2-56))
-KPSEMRNLQATDFAKEIDARKKELMELRFQAAAGQLAQPHRVRQLRREVAQLNTV-------------
General information:
TITO was launched using:
RESULT:
Template:
3PIO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2848 for 291 contacts (-9.8/contact) +
2D Compatibility (PS) -5902 + (NN) -1409 + (LL) 1408
1D Compatibility (HY) -5200 + (ID) 1150
Total energy: -15101.0 ( -51.89 by residue)
QMean score : 0.669
(partial model without unconserved sides chains):
PDB file :
Tito_3PIO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PIO-query.scw
PDB file :
Tito_Scwrl_3PIO.pdb
: