Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSVTLINNENNARYEFETIECTRGPKAVDFSKLFETTGFFSYDPGYSSTAGCQSKISYINGKKGELYYRGHRIEDLVAKYKYVDVCRLLLTGELPKNQDESLEFELELRHRSF-VHESLLNMFSAFPSNAHPMAKLSSGVSILSTLYSTHQNMHTEEDYQTMARRIVAKIPTLAAICYRNEVGAPIIYPDIARSYVENILFMLRGYPYSRLKHTTQGEVGITPLEVEAFDKILTLHADHGQNASSTTVRNVASTGVHPYAAISAGISALWGHLHGGANEKVLLQLEEIGDVKNVDKYIAR--VKDKNDNFKLMGFGHRVYKSYDPRAKILKGLKDELHQKGVKMDERLSEIAAKVEEIALKDEYFIERNLYPNVDFYSGTILRALKIPVRFFTPVFVIGRTVGWCAQLLEHVKSPQARITRPRQVYVGD |
| 1VGM Chain:A ((19-366)) | -------------------------------------------------------LTYIDGINGILRYRGYDINDLVNYASYEELIHLMLYGELPNRQQ--LNQIKGIINESFEVPEQVISTIFSMPRNCDAIGMMETAFGILASIYDPKWNRATNKE---LAVQIIAKTATITANIYRAKEGLKPKIPEPSESYAESFLAATFG------KKPTQEEI-------KAMDASLILYTDHEVPASTTAALVASSTLSDMYSCIVAALAALKGPLHGGAAEEAFKQFVEIGSVENADKWFEEKIIKGKS---RLMGFGHRVYKTYDPRAKIFKTLAKSFAEKNENV-KKYYEIAERIEKLGV--DTFGSKHIYPNTDFYSGIVFYALGFPIYMFTSLFALSRVLGWLAHIIEYVEE-QHRLIRPRALYIGP |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1VGM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -183495 for 2976 contacts (-61.7/contact) +
2D Compatibility (PS) -36810 + (NN) -11008 + (LL) 3364
1D Compatibility (HY) -26800 + (ID) 6800
Total energy: -261549.0 ( -87.89 by residue)
QMean score : 0.514
|
|
|