Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKEKPFNSEQMAFLEELLSHQEKHLESKLSGFSVNDLDMQSVFRLERNRLKIAYRLLGLMSFIALVLAIVLISILPLQKTEHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKAQNSIYVQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEIAPTNRND |
2GQ8 Chain:A ((245-285)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DADPILTYTAAAALLNKHRIVY-----------LHIAEVDWDDAPDTPVSFKRALREAYQGVLIYAGR |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GQ8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -2247 for 164 contacts (-13.7/contact) +
2D Compatibility (PS) -4580 + (NN) -5024 + (LL) 17520
1D Compatibility (HY) -3600 + (ID) 750
Total energy: 1319.0 ( 8.04 by residue)
QMean score : 0.559
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