Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLNTTQKSLLVFMGVFFLIFGVDQAIKHAILEGFHYESLVIDIVLVFNKGVAFSLLSFLEGGLKYLQILLILGLFIFLMRQKELFKSHAIEFGMVFGAGVSNVLDRFVHGGVVDYVYYHYGFDFAIFNFADVMIDVGVGVLLLRQFFFKQKQNKIKGIITLFK
1VF5 Chain:F ((1-33))
-------------------------------------------------------------------------------MTEEMLYAALLSFGLIFVGWGLGVLLLKIQGAE---------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1VF5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1678 for 131 contacts (-12.8/contact) +
2D Compatibility (PS) -3444 + (NN) -1602 + (LL) 12540
1D Compatibility (HY) -2800 + (ID) 350
Total energy: 2666.0 ( 20.35 by residue)
QMean score : -0.244
(partial model without unconserved sides chains):
PDB file :
Tito_1VF5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VF5-query.scw
PDB file :
Tito_Scwrl_1VF5.pdb
: