Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANHKSAEKRIRQTIKRTERNRFYKTKVKNIIKAVREAVAINDVAKAQERLKIANKE---LHKFVSKGILKKNTASRKVSRLNASVKKIALA
2VQF Chain:T ((11-91))
-----SALKRHRQSLKRRLRNKAKKSAIKTLSK---KAVQLAQEGKAEEALKIMRKAESLIDKAAKGSTLHKNAAARRKSRLMRKVRQLLEA
General information:
TITO was launched using:
RESULT:
Template:
2VQF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 6977 for 477 contacts (14.6/contact) +
2D Compatibility (PS) -8161 + (NN) -2680 + (LL) 816
1D Compatibility (HY) -1200 + (ID) 1600
Total energy: -5848.0 ( -12.26 by residue)
QMean score : 0.494
(partial model without unconserved sides chains):
PDB file :
Tito_2VQF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VQF-query.scw
PDB file :
Tito_Scwrl_2VQF.pdb
: