Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFLNGLAGNLLIVVILLCVVVFFALKAIHIQKEQATNYYRYKDINALEAKNTQNHANYELVNQGSKK
2L34 Chain:A ((9-25))
------LAGIVVGDLVLTVLIALAVYFLGRL-------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2L34.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11563 for 63 contacts (-183.5/contact) +
2D Compatibility (PS) -1634 + (NN) -686 + (LL) 3400
1D Compatibility (HY) -2400 + (ID) 200
Total energy: -13083.0 ( -207.67 by residue)
QMean score : 0.652
(partial model without unconserved sides chains):
PDB file :
Tito_2L34.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2L34-query.scw
PDB file :
Tito_Scwrl_2L34.pdb
: