Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLEIKNLNCVLNSHFSLQNINISLSYSERVAIVGESGSGKSSIANLVMRLNPRFKPHNGEILFETTNLLKESEAFMQHLRGNIIAYIAQDPLSSLNPLHKIGKQMSEAYFLHHKNASQVLLKEQVLNAMKQVQLDEKFLDRYPYELSGGQRQRVCIAMGIINAPKLLICDEPTTALDAQIQNQILDLLKQLSVEKNIALLFISHDLKAVKRLADRVYVLKKGEIVETNLTKELFNDPKHEYSKLLIQASNLPAKNLKALDETLLEVKDFSVYYLQKRFFRPSLKKPLIASVDFSLKAKENIGIIGESGSGKSSLALGLLKLALNSGEEKILGQSVGLLNSKA-FKPYRKILQMVFQDPYASLNPRLS-IQSILIEALRFAYPKASQQEWHHLAELCLEEVCLNPELLNFYAYELSGGERQRVAIARAIALKPRIILLDEPTSALDKSIQKSVLELLLNLQEKQDLSYLFISHDLDVIKAFCDRVLVVSEGKIVETGAIEEVFDNPKHAYTKRLLESRL |
4YMV Chain:J ((16-236)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VLKGVTLKVNKGEVVVIIGPSGSGKSTL-LRCINLLEEPTKGEVFIDGVKINNGKVNINKVRQKVGMVFQ--HFNLFPHLTAIENITLAPVKVK--KMNKKEAEELAVDLLAKVGL-LDKKDQYPIKLSGGQKQRLAIARALAMQPEVMLFDEPTSALDPEMVKEVLNVMKQLA-NEGMTMVVVTHEMGFAREVGDRVIFMDDGVIVEEGTPEEIFYRAKNERTREFLSKIL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YMV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -173930 for 1755 contacts (-99.1/contact) +
2D Compatibility (PS) -23265 + (NN) -9839 + (LL) 21988
1D Compatibility (HY) -22000 + (ID) 3800
Total energy: -210846.0 ( -120.14 by residue)
QMean score : 0.559
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