Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDILKTLQKHLGDVETSDFKTNAIEKSQQIAKFSRDMKNINESVGALQVLQIACKKLLNKSMGLEDKDALQASIIKQELREIVENCQFLASPLFDTQLNIAINDEVFSMIVDNPLNLLENVGGFQAYLEEKLNEIKELLGYLSESLSNPKAFMPKQSFSNKSLKDLLSDDLRA
3VVK Chain:A ((18-44))
------------------------------------------------------------------------EVTQRELFEFVLNDPLLASSLY---INIALAGLSILLFVFMTRGLDDPRAKLIAVSTILVPVVSIASYTGLASGLTISVLEMPAGHFAEGSSVMLGGEEVD
General information:
TITO was launched using:
RESULT:
Template:
3VVK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11764 for 113 contacts (-104.1/contact) +
2D Compatibility (PS) -2795 + (NN) 100 + (LL) 5728
1D Compatibility (HY) -3600 + (ID) 600
Total energy: -12931.0 ( -114.43 by residue)
QMean score : 0.186
(partial model without unconserved sides chains):
PDB file :
Tito_3VVK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VVK-query.scw
PDB file :
Tito_Scwrl_3VVK.pdb
: