Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGKFSKLGFILATLGSSIGLGHIWRFPYMVGHNGGSAFVLLYLALTLSLGIAMLLVEMLIGNLGKKDVVSNYQILDPK------RKKYYPFTSFFILGGPLILSFYAV-VLGWVLYYL--FVVTFDLPKDLEQAKMQFSMLQN-GSLIWPVIGF----SACLLPTIW---------FVS-----RGIEKGIEKLNVVLMPLLFVIFIGLLIYAMTLE----SMPKALRFLFNFEIQKI-DFKVVMDALGQMFFSLSLGVGTIITYSAFTPKKENLLKSSLFI--------VLPGILISLIAGVMIFTFVFEYHADVSQGPGLVFISLPLTFAKMGISGQIVSLFFFMALVFAGITSTVSLIEPLALYLINRFNFSRLKASLWIGVVVYVLGVLVILSMNERYAKFLSFAHKSVFGWLDFITSSFLMPLGGLFSVLFIGWILNKKRSFLATKHFFSANAFKAWHFSVRFIAPVVILAIFILQFK |
| 3F4J Chain:A ((10-457)) | ----TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGG----AQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGL-VPEPPP--TDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFITLPAIFSQTA-GGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAVLWTAAIVFFSAHLVM------------FLNKSL-DEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAR |
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General information:
TITO was launched using:
| RESULT:
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Template: 3F4J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -432271 for 3514 contacts (-123.0/contact) +
2D Compatibility (PS) -41134 + (NN) -6217 + (LL) 2188
1D Compatibility (HY) -43200 + (ID) 6250
Total energy: -526884.0 ( -149.94 by residue)
QMean score : 0.331
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