Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLSVIILAAGKGTRMHSSLPKTLHTICGEPMLFYILEVAFSI-SNDVHLVLHHQQERIKEAVSKRFKGVIFHAQIVEKYSGTGGAIMQENKTPIPTQHERVLILNADMPLITKDALTPLLESH-NNAIGLL--HLADPKGYGRVILENHQVKKIVEEKDANDEEKTIKSVNAGVYFFERKFLERYLPKLHDQNAQKEYYLTDLIALGIKGNEKIDAI----FLEEECFLGVNSQTERAKAEEIMLERLRKNAMDLGVVMQLPSSIYLE------KGVSFKGECVLEQGVRL-----IGN-CLIENA------RIKAYSVIEESQI-INSSVGPFAHARPKS-VICDSHVGNFVETKNAKL-QGTKAGHLSYLGDCEIGKNTNVGAGVITCNYDGKKKHQTIIGENVFIGSDSQLVAPINIGSNVLIGSGTTITKDIPSGSLSLSRTPQTNIENGYFKFFKKP |
4KNR Chain:A ((6-453)) | -LSAVILAAGKGTRMYSDLPKVLHTIAGKPMVKHVIDTAHQLGSENIHLIYGHGGDLMRTHLANEQVNWVLQTEQL----GTAHAVQQ--AAPFFKDNENIVVLYGDAPLITKETLEKLIEAKPENGIALLTVNLDNPTGYGRIIRENGNVVAIVEQKDANAEQLNIKEVNTGVMVSDGASFKKWLARVGNNNAQGEYYLTDLIALANQDNCQVVAVQATDVMEVE---GANNRLQLAALERYFQNKQASKLLLEGVMIYDPARFDLRGTLEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAETHVGNFVEIKKSTVGKGSKVNHLTYVGDSEIGSNCNIGAGVITCNYDGANKFKTIIGDDVFVGSDTQLVAPVKVANGATIGAGTTITRDVGENELVITRVAQRHIQ-GWQRPI--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4KNR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -265503 for 3315 contacts (-80.1/contact) +
2D Compatibility (PS) -45913 + (NN) -14009 + (LL) 736
1D Compatibility (HY) -36800 + (ID) 8900
Total energy: -370389.0 ( -111.73 by residue)
QMean score : 0.487
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