Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNFYQKIYTHKVVFSSLFFLLFLFNVETLLFSHFSDDFSQLFFLFENHVYDFIIKLDYLGLIGVSSIYLLALILKPFTLTRQKCACIGILCLSFYAWNFPIKNSSIALYVFYFALLGTLLWRFLGASMKQSFLPSMNICVVWVFASSLQSFRFLSVSDCVDFSLFILALFLLILVLIYHKRLFGLYEYANTLILIVGLCVVVLCSSMFIQTKEYYGMRLGFYFLG--LLGWLLEYIHNTLRRLEHKI
1ZYO Chain:A ((4-189))
-SFYSPVKAGDEPAS---LVAIKSGPTTIGFGCRTK--IEDCLLTAHHVWC-------------NSMRPTGLAKAGKQVSVED-------------WEISMSSSDKMLDFAIVRVPTHVWSKLGVKSTPLVCPSSKDVITCYGGSSSDCLMSGVGSSSTSEFTWKLTHTCPT------AAGWSG---------------------TPLYSSRGVVGMHVGFEEIGKLNRGVNMFYVANYLLRS----
General information:
TITO was launched using:
RESULT:
Template:
1ZYO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -248172 for 1530 contacts (-162.2/contact) +
2D Compatibility (PS) -18835 + (NN) 4532 + (LL) 6816
1D Compatibility (HY) -1600 + (ID) 1500
Total energy: -258759.0 ( -169.12 by residue)
QMean score : 0.183
(partial model without unconserved sides chains):
PDB file :
Tito_1ZYO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZYO-query.scw
PDB file :
Tito_Scwrl_1ZYO.pdb
: