Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNLINEKLNNLENSATKSPKEAVVLLNMGGPNSLYEVGVFLKNMFDDPFILTIKNNFMRKMVGKMIVNSRIEKSKKIYEKLGGKSPLTPITF----ALTERLNELDPSRF---YTYAMRYTPPYASMVLQDLALKEIESLVFFSMYPQYSSTTTLSSFNDAF---NALKSLETFRPKVRVIERFYADKKLNEIILNTILSALNNC---KSQDFVLIFSVHGLPKSIVDAGDTYQQECEHHVSLLKELMQQKNIPFKEVLLSYQSKLGPMKWLEPSTEE----LIEKHRKSNIIIYPLAFTIDNSETLYELDMQY-RLMAERLAVKEYLVCPCLNDSIEFAKFIIELVKNLKSE |
| 4KMM Chain:A ((12-334)) | ----------------RKPKTGILMLNHGGPETLGDVHDFLLRLFLDRDLMTLP---IQNKLAPFIAKRRTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTM--KWSTIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCN-PYR---LVWQSKVGPMPWLGPQTDESIKGLCERGRK-NILLVPIAFTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQS |
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General information:
TITO was launched using:
| RESULT:
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Template: 4KMM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -171092 for 2434 contacts (-70.3/contact) +
2D Compatibility (PS) -32825 + (NN) -14939 + (LL) 1560
1D Compatibility (HY) -24400 + (ID) 5450
Total energy: -247146.0 ( -101.54 by residue)
QMean score : 0.479
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