Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKVFKRLEKLFSKIQNDKVYGVEHGVEVVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVLLHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEIKNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMPNPKTGTVTMDIAKAVTNAKSGQVNFRVDKKGNVHAPIGKASFPEEKIKENMLELVKTINRLKPSSAKGKYIRNAALSLTMSPSVNLDAQELMDIK
3J5S Chain:F ((3-225))
---KLTKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVDQAGLSASV
General information:
TITO was launched using:
RESULT:
Template:
3J5S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73430 for 1676 contacts (-43.8/contact) +
2D Compatibility (PS) -23538 + (NN) -7116 + (LL) 416
1D Compatibility (HY) -18400 + (ID) 5600
Total energy: -127668.0 ( -76.17 by residue)
QMean score : 0.456
(partial model without unconserved sides chains):
PDB file :
Tito_3J5S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J5S-query.scw
PDB file :
Tito_Scwrl_3J5S.pdb
: