Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKRNVTAKKKVVKKNIARGVVYISATFNNTNITITDEMGNVICWSTAGGLGFKGSKKSTPYAAQQAVESALSKAKEHGVKEVGIKVQGPGSGRETAIKSVGATEGVKVLWIKDITPLPHNGCRPPKRRRV
1HNX Chain:K ((12-126))
--------------RQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTGAGREQAIRALQAS-GLQVKSIVDDTPVPHNGCRPKKKFRK
General information:
TITO was launched using:
RESULT:
Template:
1HNX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29772 for 868 contacts (-34.3/contact) +
2D Compatibility (PS) -12755 + (NN) -7507 + (LL) 1568
1D Compatibility (HY) -4800 + (ID) 2950
Total energy: -56216.0 ( -64.76 by residue)
QMean score : 0.553
(partial model without unconserved sides chains):
PDB file :
Tito_1HNX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HNX-query.scw
PDB file :
Tito_Scwrl_1HNX.pdb
: