Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHDFLKAFKDAFPHTISIFLGYLLMGMTFGMLLAQQGYDYKVALFMSLFIYAGAIQFVAITLLSAQASLMNVVIVSLLVNARQTCYALSMLDRFKNTKWRLPYLAHALTDETFALLNLYAPKKGVNETDFMFSISLLNHSYWIFGSLVGSLVGSHFSFDTQGMEFVMTAIFIVLF----------------MEQYKRNTNHKNAW----LGIAIAVVCLALF---GTEYFLLIALVLMVLALILFRKQLEC
4F0D Chain:A ((2-271))
-----MGWAAAREAAGRDMLAADLRCSLFASALQSYKRDSVLRPFPASYARGDCKDFEALLADASKLPNLKELLQSSGDNHKRAWDLVSWI--LSSKVLTIHSAGKAEFEKIQKLTG--APHTPVPAPDFLFEIEYFDPANAKFYETKGER-DLIYAFHGSRLENFHSIIHNGLHCHKTSLFGEGTYLTSDLSLALIYSPHGHGWQHSLLGPILSCVAVCEVIDHPDKYFVVTNNQLLRVKYLLVYSQ---
General information:
TITO was launched using:
RESULT:
Template:
4F0D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -259507 for 1604 contacts (-161.8/contact) +
2D Compatibility (PS) -21816 + (NN) 3568 + (LL) 1304
1D Compatibility (HY) -1200 + (ID) 1850
Total energy: -279501.0 ( -174.25 by residue)
QMean score : 0.293
(partial model without unconserved sides chains):
PDB file :
Tito_4F0D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4F0D-query.scw
PDB file :
Tito_Scwrl_4F0D.pdb
: