Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTMNSVLECKELALYGGSFDPLHKAHLAIIEQTLELLPFVQLIVLPAYQNPFKKPCFLDAKTRFKELERALKGMPRVLLSDFEIKQERAVPTIESVLHFQKLYRPKTLYLVIGADCLRHLSSWTNAKELLKRVELVVFERIGYEEIQFKGRYHPLKGIDAP---ISSSAIRASLGV
3MMX Chain:A ((4-162))
----------RKIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQ-------NITSVESRLQMLELATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLPKWYNIEALLDLVTFVGVARPGY---KLRTPY-PITTVEIPEFAVSSSLLRERYKE
General information:
TITO was launched using:
RESULT:
Template:
3MMX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125998 for 1098 contacts (-114.8/contact) +
2D Compatibility (PS) -16085 + (NN) -8764 + (LL) 1284
1D Compatibility (HY) -11600 + (ID) 2050
Total energy: -163213.0 ( -148.65 by residue)
QMean score : 0.547
(partial model without unconserved sides chains):
PDB file :
Tito_3MMX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MMX-query.scw
PDB file :
Tito_Scwrl_3MMX.pdb
: