Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKPIKTYDIKEEELAKTAYATIKTNKGNITLELFYKDAPQAVSNFVTLA--KEGF-YNGLNFHRVIAGFVAQGG-CPYGTGTGG--------PEHRIKCEVAHNPNKHQRGSISMAHAGRDTGGSQFFLCFVDLPHLDGEHTVFGKITSAESLSVLDKIKQGDIIESVVFSPSL
3ICH Chain:A ((26-151))
--------------------------GRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLK-HYGP-----GWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVL--EGMEVVRKVESTKTDSRDKPLKDV
General information:
TITO was launched using:
RESULT:
Template:
3ICH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62761 for 806 contacts (-77.9/contact) +
2D Compatibility (PS) -12044 + (NN) -5041 + (LL) 2776
1D Compatibility (HY) -10400 + (ID) 2800
Total energy: -90270.0 ( -112.00 by residue)
QMean score : 0.472
(partial model without unconserved sides chains):
PDB file :
Tito_3ICH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ICH-query.scw
PDB file :
Tito_Scwrl_3ICH.pdb
: