Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MMKDMTTGNPTKLIFLFAMPMLIGNLFQQFYTMIDAVIVGKFVSVDALAAVGATNSVNFFMISLIIGLMSGISVVVAQYFGFKDYDRLKDVIATATYAVVFSAIILTVAGVLLAKPLLILLRTPANILD--DSTIFLTTLFIGI-LPMSLYNGMAAILRALGNSIT-PLIFLILSS---LMNIALDFLFVV----YMDMGVRGAAIATVLSQTAAAIAVIYYAYRHVPFMRIERAKFKLSTP---LLKEMVRIGLPSGLQGSFISIGNMALQSLINGFGSSVVAAYTAASRIDSLTYQPGIAFGAASSMFAGQNIGAGKIDRVREGFWSGIKVVTAISIGITILVQLFARQFLLLFVDSSETEVINIGVSYLLIVSLFYVVVGILFVVRETLRGTGDAMVPLAMGIFELVSRLVIGFVLSLYIGYVGLWWATPVAWITATILGVWRYKSGAWQKKAVIRRK |
4HUN Chain:A ((14-393)) | -----------RLLTALALPMLLAQVAQVGIGFVDTVMAGGAGKED-LAAVALGSSAFATVYITFMGIMAALNPMIAQLYG---AGKTGEAGETGRQGIWF-GLILGIFGMILMWAAITPFRNWLTLSDYVEGTMAQYMLFTSLAMPAAMVH---RALHAYASSLNRPRLIMLVSFAAFVLNVPLNYIFVYGKFGMPALGGAGCGVATMAVFWFSALALWIYIAKE-KFFRPFGLTAKFGKPDWAVFKQIWKIGAPIGLSYFLEASAFSFIVFLIAPFGEDYVAAQQVGISLSGILYMIPQSVGSAGTVRIGFSLGRREFSRAR--YISGVSLVSGWVLAVITVLSLVLFRSPLASMYNDDPAVLSIASTVLLFAGLFQPADFTQCIASYALRGYKVTKVPM----------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4HUN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -297574 for 3068 contacts (-97.0/contact) +
2D Compatibility (PS) -35380 + (NN) 17938 + (LL) 6712
1D Compatibility (HY) -26400 + (ID) 4400
Total energy: -339104.0 ( -110.53 by residue)
QMean score : 0.162
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