Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSEFFSTLLLIIGLLIGFF-----LAI---LLILAGIRRFFCSAEEPLKRIRRYQVWH---------NRYQFNEEVTSFFTVIGATLLVSLITVQITAIPFQYTVLIFWSSWLFHLLSFWKKIRVPK-----------------KMKNEMIQLAGFLLITALYFVGYFAMKSLHFSIIHVADFPGVIQFGIRTYLTICSL--FVASGALIVWQRIYVKLLK-
2H0R Chain:A ((1-216))
------MKTLIVVDMQNDFISPLGSLTVPKGEELINPISDLMQDADRDWHRIVVTRDWHPSRHISFAKNHKDKEPYSTYTYHSPRPGDDSTQEGILWPVHCVKNTWGSQLVDQIMDQVVTKHIKIVDKGFLTDREYYSAFHDIWNFHKTDMNKYLEKHHTDEVYIVGVALEYCVKATAISAAE-LGYKTTVLLDYTRPISDDPEVINKVKEELKAHNINVVDK
General information:
TITO was launched using:
RESULT:
Template:
2H0R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -202518 for 1311 contacts (-154.5/contact) +
2D Compatibility (PS) -18101 + (NN) 5251 + (LL) 732
1D Compatibility (HY) 2400 + (ID) 1250
Total energy: -213486.0 ( -162.84 by residue)
QMean score : 0.153
(partial model without unconserved sides chains):
PDB file :
Tito_2H0R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2H0R-query.scw
PDB file :
Tito_Scwrl_2H0R.pdb
: