Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LYEKLVNKYQDEVTIREEKMPYKLPGLYLNGMIFISKDQSSIEKGCVLVEELMHYKYTVGNITKQETIMDKKQEIFARRKGYEELIPLDDIIACFYLGLREYFEVAEFLEVTEEFLRHTVSHY-----AEKYGPMYDYGGYFINFGNSIDVYKKF
3V55 Chain:A ((362-438))
--------------------------------------------------------------------------------------PLVDVYELTNLLRQLDFKVVSLLDLTEYEMRNAVDEFLLLLDKGVYGLLYYAGHGYENFGNS-------
General information:
TITO was launched using:
RESULT:
Template:
3V55.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19689 for 251 contacts (-78.4/contact) +
2D Compatibility (PS) -5793 + (NN) -427 + (LL) 7800
1D Compatibility (HY) -4000 + (ID) 1000
Total energy: -23109.0 ( -92.07 by residue)
QMean score : 0.041
(partial model without unconserved sides chains):
PDB file :
Tito_3V55.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V55-query.scw
PDB file :
Tito_Scwrl_3V55.pdb
: