Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKSLSFMRVLEAVRTMLQEKGGLDISIVMRDQVEMPTTMIEMIDQEEEESQTAWKEKYRFAIHHYTNETDLAGVEKIDTLIQTGFTLPEGYKLIAVRHYGKQNLVK-ENTLIHAKTSFEVSICRELKVKI
3UM0 Chain:A ((71-161))
---------------------------------------INSLDESTQESKLRYIQNFKWT-DTLQGQVPSAQQDAVFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFKHLK---
General information:
TITO was launched using:
RESULT:
Template:
3UM0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5801 for 470 contacts (-12.3/contact) +
2D Compatibility (PS) -8458 + (NN) 436 + (LL) 4468
1D Compatibility (HY) -4000 + (ID) 1000
Total energy: -14355.0 ( -30.54 by residue)
QMean score : -0.065
(partial model without unconserved sides chains):
PDB file :
Tito_3UM0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UM0-query.scw
PDB file :
Tito_Scwrl_3UM0.pdb
: