Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKIWIDAGHGGKDSGASGN--GLVEKNWVLTVAKQLQTELVK-AGFEVGMTRTNDTFYELSDRAKKANSFKADLFISLHFNAGG---GKGYEDYIYTSVPAATVEIQKIIHKNIITKVTKHGMNDRGMKKANFAVLRETAMDAILLEAGFCDST-DALILEKKAYQTDYCLGIVSAVQEIFGAMVTKYRAGKYLTSDDAISGTNIKGYLEAGTKVFVYKETEKTLNLTTTKGVPGSWVLKTEVNTGKR
1JWQ Chain:A ((1-178))
MKVVVIDAGHGAKDSGAVGISRKNYEKTFNLAMALKVESILKQNPKLEVVLTRSDDTFLELKQRVKVAENLKANVFVSIHANSSGSSASNGTETYYQRSA---SKAFANVMHKYFAP---ATGLTDRGIRYGNFHVIRETTMPAVLLEVGYLSNAKEEATLFDEDFQNRVAQGIADGITEYLDV-----------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1JWQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97567 for 1519 contacts (-64.2/contact) +
2D Compatibility (PS) -18223 + (NN) -5027 + (LL) 4136
1D Compatibility (HY) -12400 + (ID) 3200
Total energy: -132281.0 ( -87.08 by residue)
QMean score : 0.449
(partial model without unconserved sides chains):
PDB file :
Tito_1JWQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JWQ-query.scw
PDB file :
Tito_Scwrl_1JWQ.pdb
: