Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEEQEIIEKVEILPNNFSENDSIYISQENIKNLVLFSKENQTVLELLITPFLICVNSGLKYELHYYEISTEISKNDTEIIGFPFGNKLPKEITDNISPKLFVRREDYSAFENFLSQYFNAMKSMGFADDKQAIGMIEHGATLFYEVL
2DNA Chain:A ((20-43))
------------------------------------------------------------------------------------------------------------------SKEMECLQAMGFVNYNANLQALIA---------
General information:
TITO was launched using:
RESULT:
Template:
2DNA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7124 for 113 contacts (-63.0/contact) +
2D Compatibility (PS) -2541 + (NN) -712 + (LL) 9136
1D Compatibility (HY) -1600 + (ID) 200
Total energy: -3041.0 ( -26.91 by residue)
QMean score : 0.608
(partial model without unconserved sides chains):
PDB file :
Tito_2DNA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DNA-query.scw
PDB file :
Tito_Scwrl_2DNA.pdb
: