Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LYKNYLQRTLVLLLCFILYFFTFPLGGKAYSLNNWNKPIKNSVTTKQWMSALPDTTNLAALSIPGTHDTMSYNGDITWTLTKPLAQ----TQTMSLYQQLEAGIRYIDIRAK---DN-LNIYHGPIFLNASLSGVLETITQFLKKNPKETIIMRLKDE----QNSNDSFDYRIQPLINIYKDYFYTTPRTDTSNKIPTLKDVRGKILLLSE-NHTKKPLVIN------SRKFGMQFGA-PNQVIQDDYNGPSVKTKFKEIVQTAYQA---SKADNKLFLNHISATS---LTFTPRQYAAALNNKVEQFVLNLTSEKVRGLGILIMDFPEKQTIKNIIKNNKFN |
| 7PTD Chain:A ((6-275)) | ------------------------------ELENWSK----------WMQPIPDSIPLARISIPGTHDSG------TFKLQNPIKQVWGMTQEYDFRYQMDHGARIFDIRGRLTDDNTIVLHHGPLYLYVTLHEFINEAKQFLKDNPSETIIMSLKKEYEDMKGAEDSFSSTFE------KKYFVDPIFLKTEGNI-KLGDARGKIVLLKKYSGSNEPGGYNNFYWPDNETFTTTVNQNANVTVQDKYK-VSYDEKVKSIKDTMDETMNNSEDLNHLYINFTSLSSGGTAWNSPYYYASYINPEIANYIKQKNPARV---GWVIQDY---------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 7PTD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -100632 for 1894 contacts (-53.1/contact) +
2D Compatibility (PS) -26091 + (NN) -6735 + (LL) 4292
1D Compatibility (HY) -17600 + (ID) 4600
Total energy: -151366.0 ( -79.92 by residue)
QMean score : 0.548
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