Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKMLKKGTAVLFVMIMAVMLVACGDKEETKTYTLSQNGVDSKLTYTYKGDKVTKQTAENTMSYASLGVASKEDAEKMLKATSDKFQGIDGLKEKIEYKDDK-AIETLEVDYTKISSEDMNKIPGMSSNGDTSKGISMEESAKMLESQGY-KEVSK |
2DF4 Chain:A ((268-357)) | -----------------------------------------------------------------LGEGVADDVKEAVQNAVETLKSLGAVVEEVSLPNTKFGIPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKR |
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General information:
TITO was launched using:
| RESULT:
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Template: 2DF4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 23849 for 420 contacts (56.8/contact) +
2D Compatibility (PS) -9647 + (NN) -4119 + (LL) 5168
1D Compatibility (HY) -4400 + (ID) 950
Total energy: 9901.0 ( 23.57 by residue)
QMean score : 0.241
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