Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKAFLSIGTNIGERLENLNDALRGLAASNQINITNVSSVYETDAVGYEDQAAFLNIAVEIETDFPPIDLLDFCLALELELGRVRLF-KWGPRLIDIDVLLYDDVKTDTEKLKIPHPYMKERAFVMIPLIEISPEKSNLVENPALLEEQGVRKIKNQVNW
1EQM Chain:A ((3-134))
---AYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPE-------------------------
General information:
TITO was launched using:
RESULT:
Template:
1EQM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102915 for 943 contacts (-109.1/contact) +
2D Compatibility (PS) -13704 + (NN) -2037 + (LL) 2208
1D Compatibility (HY) -10800 + (ID) 2800
Total energy: -130048.0 ( -137.91 by residue)
QMean score : 0.449
(partial model without unconserved sides chains):
PDB file :
Tito_1EQM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EQM-query.scw
PDB file :
Tito_Scwrl_1EQM.pdb
: