Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVLEAKQSAVEEIKTKLSASASTVIVDYRGLNVGEITDLRKQLRDA---GIEFKVYKNSLTRRAVEANGYEGLEGALTGPNAIAFSN-EDVVAPAKILNDFAKDH--EALEIKAGVIEGKVASLEEIKALATLPSREGLLSMLCNVLQAPVRGLAIATKAVADQKEGQEA
1ZAV Chain:A ((3-163))
---TRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNAEYEGYEEFLKGPTAVLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLEGKKFTAEEVENIAKLPSKEELYAMLVGRVKAPITGLVFALSGIL--------
General information:
TITO was launched using:
RESULT:
Template:
1ZAV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53590 for 1061 contacts (-50.5/contact) +
2D Compatibility (PS) -16884 + (NN) -4534 + (LL) 652
1D Compatibility (HY) -12800 + (ID) 2650
Total energy: -89806.0 ( -84.64 by residue)
QMean score : 0.665
(partial model without unconserved sides chains):
PDB file :
Tito_1ZAV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZAV-query.scw
PDB file :
Tito_Scwrl_1ZAV.pdb
: