Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKNTPEALIDLFEELKNLFETDTSL----NNQNSSRLQEILTTATIRVRKASQTVELEARSVFQNIHTLCFVEKIHLNPEEANVLKEIEKIALSKGFWGGMNTLNVTNQFPSN
5C2T Chain:A ((518-568))
------KKMMDLFKELKRLKTTDRSLIWNSDLTESLELQNLMLNATQTIVAAENRKE---------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
5C2T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5081 for 204 contacts (-24.9/contact) +
2D Compatibility (PS) -4885 + (NN) -1152 + (LL) 4212
1D Compatibility (HY) -3200 + (ID) 900
Total energy: -11006.0 ( -53.95 by residue)
QMean score : 0.630
(partial model without unconserved sides chains):
PDB file :
Tito_5C2T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5C2T-query.scw
PDB file :
Tito_Scwrl_5C2T.pdb
: