Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRQYMKMVRPFDFVIIILLILGSFLPLILFSVAEAKHVGDDVVAIISQDGKVIREIPLTGHKGNEQFTIKGKGAQYNLMEVDGERIRIKED-NSPDQVGVKMGWKSKAGDTIVCLPHKVFVEIKSTNKKSKDPDTDLIVPN
4JRY Chain:D ((88-155))
------------------------------------------------------------------FCAVGGGSNYQLIWGAGTKLIIKPNIQNPDPAVYQLR-DSKSSDKSVCL----FTDFDSQTNVSQSKDSDVYI--
General information:
TITO was launched using:
RESULT:
Template:
4JRY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1938 for 248 contacts (-7.8/contact) +
2D Compatibility (PS) -7032 + (NN) -1709 + (LL) 5804
1D Compatibility (HY) -4400 + (ID) 1050
Total energy: -10325.0 ( -41.63 by residue)
QMean score : 0.374
(partial model without unconserved sides chains):
PDB file :
Tito_4JRY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JRY-query.scw
PDB file :
Tito_Scwrl_4JRY.pdb
: