Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTTIFPKEQNVT----PLFEQILANPTACRRFKD--------VFLDNLESYQETRGFEKDDTLFAKIILSAYRQSDVSALLLGV--CGRTLFELLRQAFL--IPKKLTV---DNPFFLTDKEGNFIAKKDDISNREQEKFQEIYQSDLHHSETTIFLVDDDD----IVHS---------YEPDFSISTKR----------INKKRGILVLYSLPD------TLKSGMTESEV-YAFIWKTFLH----------IQEIIPSSR----IFYGQET-------------------------------SENADELGV----------------FLPIHHFEKKMLQNIEQVNELVDALREQMVNK------------------- |
| 2VDU Chain:B ((2-436)) | -SVIHPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFPIYSYIRNLRLTSDE-SRLIACA--DSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFG--DVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFVVNNEKSNEFDSAIIQSVQGDSNLVTKKEEIYPLYNVSSL |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VDU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -33803 for 1596 contacts (-21.2/contact) +
2D Compatibility (PS) -26066 + (NN) -1135 + (LL) 584
1D Compatibility (HY) -14800 + (ID) 3100
Total energy: -78320.0 ( -49.07 by residue)
QMean score : 0.132
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