Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQNDMYNNIRLSVIQLIDSKKENLKENNIKLTIIKNEKDGYVVELDNDKCMAEIVVEEPTYTPYRYISFEVVSLMDGKVKIIYSWYDDETSQWSDIEKELNKGIQFLNNFKTMEQ
1GD1 Chain:O ((300-317))
-------------------------------------------------------------------------VIDGKMVKVVSWYDNETG------------------------
General information:
TITO was launched using:
RESULT:
Template:
1GD1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1277 for 49 contacts (-26.1/contact) +
2D Compatibility (PS) -2160 + (NN) -2023 + (LL) 7352
1D Compatibility (HY) -2400 + (ID) 450
Total energy: -958.0 ( -19.55 by residue)
QMean score : 0.465
(partial model without unconserved sides chains):
PDB file :
Tito_1GD1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GD1-query.scw
PDB file :
Tito_Scwrl_1GD1.pdb
: