Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGNWQQKWESWRDMTAAMQQEIKIEAAEKVTSYIKNDQFEEAINVIRQTENLLNELDFETKMNRVEEQLQAFTSDQEAAKSFEASQLQNIEKPSTKVSFDLSHVKSEAINQFTKRDFNLVDSNDTHMQFLKGNRNFYMDIFNPEESEEYHYANLDEKCQYKNIGFICQ-NDAAAEIATKLTNEWLETLEAPKKKFLTVNIANLNAMKQNPEVLFQ |
1JF8 Chain:A ((2-28)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------DKKTIYFISTGNSARSQMAEGWGKEIL------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1JF8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -6706 for 105 contacts (-63.9/contact) +
2D Compatibility (PS) -2840 + (NN) -2140 + (LL) 14564
1D Compatibility (HY) -2000 + (ID) 450
Total energy: 428.0 ( 4.08 by residue)
QMean score : 0.660
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