Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKFSRFILMMAIACVAAFIFTGNGLNAKAAEEI--YLIGTDTTFAPFEFEK----DGEHVGIDMDILKAIAKDQNFKYEIKAMGFNAAVQALEANQVDGVIAGMSITDERKQKFDFSDPYFDSGVVMGILKDNDEIKTYDDLKGKKVAVKTGTEGYAFAEKIKDKYDFDIVVFDDSAQMYDDVKT-RNSVACFDDYPVLAYGVQTGNGLKIVTEKEKG---NSYGFAVNKGKNQELLEKFNAGLVNIKASGEYEKILKNYLGKNAIKENTTEKGFMGIIKSSWPALLSGLWLTIRLAVVSLIIAFIIGITFGFMKVSNSKILRGIATVYVDIFRGTPLIVQAFFFYFGIPAALDFRMPVFLAGVIALSLNAGAYMVEIVRGGIQSVDKGQMEAARSLGLPHKKAMMKVVLPQAIRMMIPSFINQFVITLKDTSIMSAIGLVELTQSGKIIMARTFESTWTWLIIGIMYLIVITILTKISDRLERRLRND |
| 4YMX Chain:A ((37-258)) | ----------------------------------GVIVMGTSADFPPFEFHKVEGGKDEIVGFDIDIANAIAKKLGVKLEIKDMDFKGLIPALQAGRVDMVIAGMTPTAERKKSVDFSDLYYDSRQVV-VVKNDSPISKFDDLKVKTIAVQIGTTSEEAAKKIP---NVKLKQLNRVSDEFMDLQNGRCDAIVVEDTVAKAY-LKEYKDMKILYMDEINNVENGSAVAVAKG-NKSLLDVVNEVIKELKQSGEYDKLVDKWF------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YMX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -100219 for 1761 contacts (-56.9/contact) +
2D Compatibility (PS) -23958 + (NN) -12767 + (LL) 23792
1D Compatibility (HY) -18400 + (ID) 4150
Total energy: -135702.0 ( -77.06 by residue)
QMean score : 0.608
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