Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDNKLEFTTIDEYITQAPPETKEV--LQKIRETIKAAAPEATEKISYQMPTFYLEGNLVHFAVAKNHYGFYPASSGIAAFE--SKLGNYKHSKGAVQFPIKEEVPYELIKEMTLFRLAENKQKAAEKLAKKKKK
4GPC Chain:A ((100-173))
-------------ITASPAVIDYVNRLEEIRDNVDGPALVAHHYVRYLGD---LSGGQVIARMMQRHYGVDPEALGFYHFEGIAKLKVYK--------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4GPC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1490 for 332 contacts (4.5/contact) +
2D Compatibility (PS) -7601 + (NN) -1070 + (LL) 5216
1D Compatibility (HY) -4800 + (ID) 1200
Total energy: -7965.0 ( -23.99 by residue)
QMean score : 0.256
(partial model without unconserved sides chains):
PDB file :
Tito_4GPC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GPC-query.scw
PDB file :
Tito_Scwrl_4GPC.pdb
: