Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --VNKFMELLGEKLMPLAAKLGENRYLTTLRDAFMLAFPLTMFGSIAVVLMNLPFWSDETKAVLQLYLGNAQSATMSIMTVFVVFGIGYSLSKYYKVEAIYGGAVALASFLILTPFFFNSPDGELITGALSLDRLGAKGMFIGMITGFIAAELYRFFVQRDWTIKMPAGVPPAVAKSFAALIPAILTLSIFLAINVMVQFFFHTNLHDVVYTVIQKPLVGLGSGIVPTLIALFFVQVLWFFGLHGQIIVNSVMDPIWNTLMLENLDAYKAGLPLPHIITKPFMEVFTVGMGGSGMTLAVVIALAFLMKSKQSKEIGRLALGPGIFNVNEPVLFGMPIVLNATILIPWIIAPLIVTTLNYFVMAAGIVPAPTGVAVPWTVPIVINGILATNSWLGGALQVVDFFIVLIIWYPFLKLVDRTNIARESEAAIK |
| 2KFE Chain:A ((1-24)) | GRGREFMSNLKEKLSGVKEKMKNS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2KFE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -1449 for 85 contacts (-17.0/contact) +
2D Compatibility (PS) -2431 + (NN) -2317 + (LL) 34240
1D Compatibility (HY) -1200 + (ID) 350
Total energy: 26493.0 ( 311.68 by residue)
QMean score : 0.537
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