Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLAE-GIVIEKEKTFGTLKFSALRREVKIVDDEGNVTEQVKERTFDLKCKEQGRMIQVSIPASAGVKNFDYNAEVEIINPIADTVATATFQGADVDWYIKAEDIVLKRPAQNQQADQKQNHDKK
2Y8N Chain:B ((1-86))
MRHYDCKNYINLDCEKGLCALTK-----GMVPIDGEGSEACPNFKPAEKCGNCKNFCN------------------------PDKYGLGTCTGLEKENWAYA----------TCGASACPSYKAE
General information:
TITO was launched using:
RESULT:
Template:
2Y8N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 23197 for 544 contacts (42.6/contact) +
2D Compatibility (PS) -8555 + (NN) 524 + (LL) 3056
1D Compatibility (HY) -2000 + (ID) 700
Total energy: 15522.0 ( 28.53 by residue)
QMean score : 0.122
(partial model without unconserved sides chains):
PDB file :
Tito_2Y8N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y8N-query.scw
PDB file :
Tito_Scwrl_2Y8N.pdb
: